| Mannschaften | Erg. | Zus. | |||
|---|---|---|---|---|---|
| 12.09.2008 6. Spieltag | |||||
| SV Werder Bremen II BSV Kickers Emden | 0:1 | 0 | |||
| 13.09.2008 6. Spieltag | |||||
| VfR Aalen FC Bayern München II | 0:0 | 0 | |||
| 14.09.2008 6. Spieltag | |||||
| FC Carl Zeiss Jena VfB Stuttgart II | 0:6 | 0 | |||
| 13.09.2008 6. Spieltag | |||||
| BTSV Eintracht Braunschweig Offenbacher FC Kickers | 4:0 | 0 | |||
| SG Dynamo Dresden 1. FC Union Berlin | 0:1 | 0 | |||
| Wuppertaler SV Borussia SV Wacker Burghausen | 2:4 | 0 | |||
| SpVgg Unterhaching SV Sandhausen | 2:0 | 0 | |||
| Fortuna Düsseldorf SSV Jahn Regensburg | 3:1 | 0 | |||
| SV Stuttgarter Kickers FC Erzgebirge Aue | 1:2 | 3.280 | |||
| 14.09.2008 6. Spieltag | |||||
| SC Paderborn 07 FC Rot-Weiß Erfurt | 2:0 | 0 | |||
| Pl. | Verein | Sp. | Gew. | Un. | Ver. | Pkt. | Tore | +/- | 
|---|---|---|---|---|---|---|---|---|
| 1. | BSV Kickers Emden | 6 | 5 | 1 | 0 | 16 | 11:4 | 7 | 
| 2. | FC Bayern München II | 6 | 4 | 2 | 0 | 14 | 8:4 | 4 | 
| 3. | SC Paderborn 07 | 6 | 4 | 1 | 1 | 13 | 12:7 | 5 | 
| 4. | 1. FC Union Berlin | 6 | 3 | 2 | 1 | 11 | 10:4 | 6 | 
| 5. | SpVgg Unterhaching | 6 | 3 | 2 | 1 | 11 | 9:6 | 3 | 
| 6. | VfB Stuttgart II | 6 | 3 | 1 | 2 | 10 | 14:5 | 9 | 
| 7. | Fortuna Düsseldorf | 6 | 3 | 1 | 2 | 10 | 10:7 | 3 | 
| 8. | FC Rot-Weiß Erfurt | 6 | 3 | 1 | 2 | 10 | 8:6 | 2 | 
| 9. | SV Sandhausen | 6 | 3 | 0 | 3 | 9 | 11:8 | 3 | 
| 10. | SV Wacker Burghausen | 6 | 3 | 0 | 3 | 9 | 11:13 | -2 | 
| 11. | BTSV Eintracht Braunschweig | 6 | 2 | 1 | 3 | 7 | 7:7 | 0 | 
| 12. | SG Dynamo Dresden | 6 | 2 | 1 | 3 | 7 | 5:6 | -1 | 
| 13. | SSV Jahn Regensburg | 6 | 1 | 3 | 2 | 6 | 7:10 | -3 | 
| 14. | SV Werder Bremen II | 6 | 2 | 0 | 4 | 6 | 9:13 | -4 | 
| 15. | Offenbacher FC Kickers | 6 | 1 | 3 | 2 | 6 | 7:11 | -4 | 
| 16. | VfR Aalen | 6 | 1 | 3 | 2 | 6 | 5:9 | -4 | 
| 17. | Wuppertaler SV Borussia | 6 | 1 | 2 | 3 | 5 | 7:10 | -3 | 
| 18. | FC Carl Zeiss Jena | 6 | 1 | 2 | 3 | 5 | 8:15 | -7 | 
| 19. | FC Erzgebirge Aue | 6 | 1 | 1 | 4 | 4 | 6:12 | -6 | 
| 20. | SV Stuttgarter Kickers | 6 | 0 | 1 | 5 | -2 | 2:10 | -8 |